Node 70
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0	0	1	0	G	1
8	0	0	0	1	T	1
9	0.01	0	0.99	0	G	0.99
10	0	0	0	1	T	1
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	1	0	0	C	1
16	1	0	0	0	A	1
17	0.29	0	0.71	0	G	0.71
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.07	0	0.93	0	G	0.93
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	1	0	0	C	1
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0.01	0.63	0.28	0.09	C	0.63
35	0.18	0.05	0.01	0.76	T	0.76
36	0	0	0.99	0	G	0.99
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.88	0	0.12	0	A	0.88
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.31	0	0.69	T	0.69
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.99	0	0.01	C	0.99
46	0.95	0	0.04	0	A	0.95
47	1	0	0	0	A	1
48	0	0.99	0	0.01	C	0.99
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.02	0	0.98	T	0.98
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.01	0	0.99	T	0.99
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.99	0	0.01	C	0.99
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.01	0	0.99	T	0.99
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	0.1	0	0.9	0	G	0.9
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0.92	0.04	0.03	C	0.92
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.04	0	0.96	0	G	0.96
83	0.99	0	0.01	0	A	0.99
84	0.07	0.78	0.07	0.08	C	0.78
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.99	0	0.01	C	0.99
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	0.62	0	0.37	0	A	0.62
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.95	0	0.05	C	0.95
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	1	0	0	0	A	1
101	1	0	0	0	A	1
102	1	0	0	0	A	1
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.14	0	0.86	T	0.86
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.02	0	0.98	0	G	0.98
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.88	0	0.12	C	0.88
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.02	0.96	0.01	G	0.96
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.06	0	0.94	T	0.94
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.8	0	0.2	C	0.8
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.81	0.01	0.15	0.03	A	0.81
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0.01	0	0.99	T	0.99
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	1	0	0	C	1
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.03	0	0.97	0	G	0.97
146	0	0	0	1	T	1
147	0	0	0	0.99	T	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	1	0	0	0	A	1
151	0	0	1	0	G	1
152	1	0	0	0	A	1
153	0	0.62	0	0.38	C	0.62
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.96	0	0.03	C	0.96
157	0.97	0	0.03	0	A	0.97
158	0	0.03	0	0.97	T	0.97
159	0.03	0.92	0.01	0.04	C	0.92
160	0.08	0	0.92	0	G	0.92
161	0	0.99	0	0	C	0.99
162	0.57	0.07	0.31	0.05	A	0.57
163	0.64	0.3	0.03	0.03	A	0.64
164	1	0	0	0	A	1
165	0.98	0	0.02	0	A	0.98
166	0.03	0.96	0	0.01	C	0.96
167	1	0	0	0	A	1
168	0.88	0.04	0.07	0.01	A	0.88
169	1	0	0	0	A	1
170	0	1	0	0	C	1
171	0	0.96	0	0.04	C	0.96
172	0	0	1	0	G	1
173	1	0	0	0	A	1
174	0.91	0.02	0.06	0.01	A	0.91
175	0.99	0.01	0	0	A	0.99
176	0	0.04	0	0.96	T	0.96
177	0.01	0.01	0.99	0	G	0.99
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.37	0	0.63	T	0.63
181	0.65	0	0.35	0	A	0.65
182	0.01	0.01	0	0.97	T	0.97
183	0.08	0.87	0.01	0.04	C	0.87
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.4	0.01	0.59	T	0.59
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	1	0	0	C	1
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.02	0	0.98	T	0.98
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.11	0	0.89	T	0.89
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	1	0	0	C	1
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	1	0	0	C	1
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0.01	0	0.99	T	0.99
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0.94	0.01	0.03	C	0.94
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0.88	0	0.12	C	0.88
226	0	1	0	0	C	1
227	0	0	1	0	G	1
228	0.02	0.1	0	0.87	T	0.87
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0	0.76	0	0.23	C	0.76
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0.02	0.02	0.1	0.87	T	0.87
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0	0	1	0	G	1
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.9	0	0.1	C	0.9
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.74	0.19	0.05	C	0.74
247	0.01	0	0.99	0	G	0.99
248	1	0	0	0	A	1
249	0	0.65	0	0.35	C	0.65
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.38	0.05	0.1	0.47	T	0.47
254	0	1	0	0	C	1
255	0	0.97	0	0.03	C	0.97
256	0	0	1	0	G	1
257	0.95	0.03	0.02	0	A	0.95
258	0.37	0.06	0.51	0.06	G	0.51
259	0	0.15	0	0.85	T	0.85
260	0	0	0	1	T	1
261	0.3	0	0.69	0	G	0.69
262	1	0	0	0	A	1
263	0.59	0.3	0.1	0.01	A	0.59
264	0.42	0.45	0.11	0.02	C	0.45
265	0.04	0.94	0.01	0.01	C	0.94
266	0	0	0	1	T	1
267	0.71	0.06	0.03	0.2	A	0.71
268	0	0	1	0	G	1
269	1	0	0	0	A	1
270	0.32	0	0.68	0	G	0.68
271	0	1	0	0	C	1
272	1	0	0	0	A	1
273	0.87	0	0.13	0	A	0.87
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0.01	0.05	0	0.94	T	0.94
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.02	0	0.98	T	0.98
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.27	0.35	0.02	0.36	T	0.36
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.92	0	0.08	C	0.92
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.98	0	0.02	C	0.98
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	0	0	0	0.99	T	0.99
303	0	0.06	0	0.94	T	0.94
304	0	0.55	0	0.45	C	0.55
305	0	0	0	1	T	1
306	0.08	0.25	0.2	0.47	T	0.47
307	0	0.03	0	0.97	T	0.97
308	0	1	0	0	C	1
309	0.13	0.45	0.03	0.4	C	0.45
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.07	0	0.93	T	0.93
313	0	0.99	0	0.01	C	0.99
314	1	0	0	0	A	1
315	0.67	0.07	0.25	0.01	A	0.67
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0	0	0.99	T	0.99
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.98	0	0.02	0	A	0.98
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0.26	0.19	0.03	0.53	T	0.53
328	0	1	0	0	C	1
329	0	0	1	0	G	1
330	0	0.35	0	0.65	T	0.65
331	0	0	1	0	G	1
332	1	0	0	0	A	1
333	0.08	0	0.92	0	G	0.92
334	0	0.98	0	0.02	C	0.98
335	0	0	0	1	T	1
336	0.07	0.03	0.06	0.84	T	0.84
337	0	0.01	0	0.99	T	0.99
338	0.26	0	0.74	0	G	0.74
339	0	0.91	0	0.09	C	0.91
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.99	0	0.01	C	0.99
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.99	0	0.01	0	A	0.99
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	1	0	0	C	1
354	0.26	0.01	0.72	0.02	G	0.72
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0	0	1	T	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.95	0.01	0.02	0.02	A	0.95
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.29	0	0.71	0	G	0.71
368	0.99	0	0.01	0	A	0.99
369	0	0.71	0	0.29	C	0.71
370	0.97	0	0.03	0	A	0.97
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.01	0.03	0.95	0.01	G	0.95
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.98	0	0.02	C	0.98
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	1	0	0	C	1
385	0	0.99	0	0.01	C	0.99
386	0.99	0	0	0	A	0.99
387	0	1	0	0	C	1
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0.04	0.15	0	0.8	T	0.8
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.99	0	0.01	C	0.99
394	1	0	0	0	A	1
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0	0	1	0	G	1
399	0.61	0.16	0.21	0.02	A	0.61
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.98	0	0.01	0	A	0.98
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	0	0	1	0	G	1
411	1	0	0	0	A	1
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0	1	0	G	1
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.01	0.93	0.05	0.01	C	0.93
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.01	0	0.99	0	G	0.99
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.99	0	0.01	C	0.99
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.99	0	0.01	C	0.99
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	1	0	0	C	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.99	0	0.01	C	0.99
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	1	0	0	C	1
452	0	0	0	1	T	1
453	0.86	0	0.13	0	A	0.86
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.01	0	0.99	T	0.99
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGGTTGAAGACGGCATCGCAAAACAAACCGAAATGTTTATCGGTAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGTTGAACCTAGAGCAAGCTTATCGTGATGAAACCGACCGCGAATTTCTTTCCGGTCAA---GGTGAAACTCGTGAGCTTTGCGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTA------AGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGGTTGAAGACGGCATCGCAAAACAAACCGAAATGTTTATCGGTAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGTTGAACCTAGAGCAAGCTTATCGTGATGAAACCGACCGCGAATTTCTTTCCGGTCAAGGTGAAACTCGTGAGCTTTGCGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTAAGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The accuracy score for that sequence is 0.961368653421634

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 4.76958771426774e-10.
The natural log of that probability is -21.4635910618433.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
D	1	A	0	9999	
S	0.71	N	0.29	2.44827586206897	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
L	0.541728	V	0.210672	2.57142857142857	
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
N	0.95	D	0.04	23.75	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
D	0.817344	E	0.133056	6.14285714285714	
N	1	A	0	9999	
I	1	A	0	9999	
D	0.62	G	0.37	1.67567567567568	
N	1	A	0	9999	
I	1	A	0	9999	
K	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
V	0.9603	I	0.0297	32.3333333333333	
E	1	A	0	9999	
D	1	A	0	9999	
G	0.99	A	0	9999	
I	0.931491	T	0.0291	32.01	
A	0.9108	T	0.0792	11.5	
K	0.64	Q	0.3	2.13333333333333	
Q	0.912	H	0.048	19	
T	1	A	0	9999	
E	0.97	D	0.03	32.3333333333333	
M	0.940896	T	0.039996	23.5247524752475	
F	1	A	0	9999	
I	0.624195	V	0.3395	1.83857142857143	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
R	0.99	A	0	9999	
E	1	A	0	9999	
T	0.99	A	0	9999	
V	1.01	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
A	1	R	0	9999	
D	0.99	N	0.01	99	
K	1	A	0	9999	
S	0.47	T	0.38	1.23684210526316	Unreliable
E	0.836	D	0.114	7.33333333333333	
L	0.99	A	0	9999	
K	0.3127	T	0.3	1.04233333333333	Unreliable
L	0.9474	I	0.0388	24.4175257731959	
E	1	A	0	9999	
Q	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
F	0.99	A	0	9999	
L	0.676	F	0.324	2.08641975308642	
S	0.9797	P	0.0303	32.3333333333333	
G	1	A	0	9999	
Q	0.9108	H	0.0792	11.5	
	0	-	0	0
G	0.99	A	0	9999	
E	1	A	0	9999	
T	1.01	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
L	0.9826	F	0.0174	56.4712643678161	
C	0.7326	Y	0.2574	2.84615384615385	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
V	0.99	A	0	9999	
A	1.01	R	0	9999	
I	1	A	0	9999	
F	1	A	0	9999	
E	0.97	D	0.03	32.3333333333333	
N	1	A	0	9999	
D	0.7029	N	0.2871	2.44827586206897	
K	0.97	E	0.03	32.3333333333333	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
H	0.9801	Y	0.0099	99	
G	0.99	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
V	0.99	A	0	9999	
	0	-	0	0
	0	-	0	0
R	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.99	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGIAKQTEMFIGNRRYFDVHYYLEGRETVEFADKSELKLEQAYRDETDREFLSGQ-GETRELCEGQVAIFENDKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGIAKQTEMFIGNRRYFDVHYYLEGRETVEFADKSELKLEQAYRDETDREFLSGQGETRELCEGQVAIFENDKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.966354662251655

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.00151602873829027
The natural log of that probability is -6.49166103528578.

